principles of pathology

• Ij?JSDv&pn Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is a terminal? a test-based interface to the computer
• v*Q)H2r<VH Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what can you do using a terminal? type commands, manipulate files, execute programs, and open documents
• "EP5#XFt!3)" Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what happens every time you type any command, and press enter? the computer will attempt to follow your instructions and then, when finished, return to the command prompt
• e(Z/2=&P!2 Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? how many ways are there to create a new folder with Windows 8.1? 2
• EdA<~KNKpP Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? how do you open a folder with Windows 8.1? double-click on the folder
• XbUi/30!W Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is the definition of a Database Workbench? a software application for the administration of multiple relational databases
• GSW+Ss5iEU Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what does the workbench concept serve to do? build and monitor the proper structure of tester's work
• O7Oh3eE3b= Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? who developed Galaxy? James Peter Taylor
• jkGB~n|5PL Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what was James Peter Taylor's lifespan? 1979-2020
• loF4CVE4(j Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what are workbenches in relativity to Linux? workbenches are wrappers around Linux commands
• eQ/7(AFP?G Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what does Galaxy focus on? data-intensive biomedical research
• fI:tL6Sjeo Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is elixir? an intergovernmental organisation that brings together life science resources from across Europe
• CLC.=/zJ([ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what kind of life science resources does Elixir bring together? databases, software tools, training materials, cloud storage, and supercomputers
• EMnX3mi*;/ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is the goal of ELIXIR? to coordinate life science resources so that they form a single infrastructure
• G9cXT2*hJ8 Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? how much disk space does the European Galaxy server have for an Elixir member? 500 Gb
• P{+vMr]@_P Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what are positive aspects of genomic data analysis in the mid 2000s? there are great browsers and data warehouses around
• oyP`pp/D@R Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is the main disadvantage of the great browsers and data warehouses used for genomic data analysis? most lack the facilities needed for sophisticated analysis
• CYHFym]7^/ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what kind of tools have been developed in bioinformatics? useful computational tools
• lD!$@9EcZ2 Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is an issue with the useful computational tools developed in bioinformatics? they are not well-integrated
• lL,F-.C%ms Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what makes computational tools used in genomic data analysis not well-integrated? they have different user interfaces and different data formats
• efg5^`yVTJ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what two programs were used to solve challenges in genomic data analysis? Excel and Perl
• CcSS-@@XYy Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is the issue with using Perl as a solution? there is an unecessary duplication of effort and bugs, hence Perl lost favor
• I%.PG!=dJb Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what would an ideal framework for genomic data analysis need to define? a common format for describing the interfaces of different computational tools and databases
• mzaZ)infrastructure to adapt interfaces into standard form"
• HZ_00.BZ9I Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? how would the ideal framework deal with data types? it would define common data types and standards for integrating the results
• J2=%6hXKiu Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is a script/program in modern bioinformatics? "a code that implements a single bioinformatics data analysis task"
• uI_X{DP9L~ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? give 3 examples of programs/scripts1. FastQC2. Trimmomatic3. salmon
• "B5<3#U,1Q*" Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is FastQC? "a program that checks NGS reads for common quality issues"
• cG3~wdaSc/ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is Trimmomatic? "a program for cleaning NGS reads"
• y*j.:`4xz Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is salmon? "a program for estimating transcript abundance from NGS reads"
• D/k=$`{>`| Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what does a custom R script use DESeq2 for? to peform differential expression analysis
• LIh:K+F_8, Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is a simple definition of a pipeline or workflow? a paticular kind of program or script that is intended primarily to combine other independent programs or scripts
• "g#rfIzu*Ug" Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what kind of indicator is there that a program has become a pipeline? there are no strict rules!
• N:q.5Dg*>R Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is one key feature of pipelines? their scalability
• tludx^k+wt Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what is scalability? the property of a system to handle a growing amount of work
• VbxPTy5*+ Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what part of a pipeline is difficult to differentiate between? the scalability of a pipeline framework and the scalability of individual tools in a pipeline
• eIvxh1eu)z Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what can be done when a pipeline tool does not scale efficiently? replacement of it with a more scalable tool
• qr2Xr(7{P5 Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what are examples of user interfaces? Galaxy, web app, command lines
• E!?fR3M}Vn Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what are examples of pipeline tools? BLAST, Blacklight, parsers
• vLt-5P.!&F Basic Laboratory Techniques in Bioinformatics::Week 1 Lecture 2: How is Bioinformatics Performed? what are examples of pipeline specifications? CWL, Spark, bash script