The proteome is the entire set of proteins expressed by a genome.
The proteome is larger than the number of genes, particularly in eukaryotes, because more than one protein can be produced from a single gene as a result of alternative RNA splicing.
The set of proteins expressed by a given cell type can vary over time and under different conditions
Eukaryotic cells have a system of internal membranes, which increases the total area of membrane.
The endoplasmic reticulum (ER) forms a network of membrane tubules continuous with the nuclear membrane.
The Golgi apparatus is a series of flattened membrane discs.
Lysosomes are membrane-bound organelles containing a variety of hydrolases that digest proteins, lipids, nucleic acids and carbohydrates.
Vesicles transport materials between membrane compartments.
Lipids and proteins are synthesised in the ER
Lipids are synthesised in the smooth endoplasmic reticulum (SER) and inserted into its membrane.
The synthesis of all proteins begins in cytosolic ribosomes.
The synthesis of cytosolic proteins is completed there, and these proteins remain in the cytosol.
Transmembrane proteins carry a signal sequence, which halts translation and directs the ribosome synthesising the protein to dock with the ER, forming RER.
Translation continues after docking, and the protein is inserted into the membrane of the ER
Once the proteins are in the ER, they are transported by vesicles that bud off from the ER and fuse with the Golgi apparatus.
As proteins move through the Golgi apparatus they undergo post-translational modification.
The addition of carbohydrate groups is the major modification.
Vesicles that leave the Golgi apparatus take proteins to the plasma membrane and lysosomes.
Vesicles move along microtubules to other membranes and fuse with them within the cell.
Secreted proteins are translated in ribosomes on the RER and enter its lumen.
The proteins move through the Golgi apparatus and are then packaged into secretory vesicles.
These vesicles move to and fuse with the plasma membrane, releasing the proteins out of the cell.
Many secreted proteins are synthesised as inactive precursors and require proteolytic cleavage to produce active proteins.