Key components of the cytoskeleton and essential in eukaryotic cells. They are crucial for:
Cell shape
Transport of vesicles
Play a role in cell signalling
Critical role in mitosis
What is the structure of microtubules?
Long, slender, filamentous tubes comprised of a-tubulin and B-tubulinheterodimers (units stuck together)
Tubulin heterodimers are connected by non-covalent bonds
Many tubulin heterodimers wrap around in a spiral structure (due to missteps)
Creates a hollow tube comprised of 13 filaments - the microtubule
Microtubule itself has general (+)- and (-)-ends
What is the structure of a-tubulin and B-tubulin heterodimers?
Associate in solution as heterodimers (a-tubulin and B-tubulin)
An a-/B-tubulin heterodimer has 4 defined surfaces - (+)-end surface (top), (-)-end surface (bottom), H3 surface, and ML surface
Additionally, the a-tubulin unit and B-tubulin unit individually have (+)- and (-)-ends
What are the four factors characterising dynamism?
Rate of microtubule growth
Rate of microtubule shrinkage
Catastrophe - frequency of transition from growth (or pause) to shrinking
Rescue - frequency of transition from shrinking to growth (or pause)
What is treadmilling?
Results from the combined effects of microtubule growth and shrinkage where heterodimer units add to one end and leave from the other. By doing so, looks like the microtubule is "moving" but actual individual heterodimers remain stationary
What are the microtubule dynamics?
Microtubules are in highly dynamic and constantly in flux, temporally and spatially
(+)-end dynamics are faster than (-)-end - rate at which tubulin heterodimers go on and come off is faster at (+)-end
Still, both ends can add/lose new heterodimer units
Tubulin heterodimer units are in equilibrium between soluble pool (solution) and being part of microtubule
(+)-end also associated with GTP cap - hydrolysing out the GTP units will compromise microtubule stability can cause it to fray and fall apart
What is the role of GTP/GDP in microtubule stability?
Both α- and β-tubulin units have a GTP/GDP binding site at the (+)-end
Within the heterodimers, the α unit retains a GTP tightly bound (due to position of interaction with the β (-)-end) and is non-exchangeable
However, β (+)-end is accessible and hydrolysis of its bound GTP to GDP occurs ~same time/shortly after addition to the growing microtubule
Normally the ‘GTP cap’ has either GTP or GDP/Pi (stable)
If the cap is lost (e.g. hydrolysis), the ends fray resulting in catastrophe (change to depolymerisation)
Where does the complexity of microtubules arise?
Observations of microtubule dynamics in vitro was many orders of magnitude slower than in cells - implies something else controls it.
In reality, large amount of functional diversity of microtubules achieve through:
Microtubule associated proteins (MAPs)
Soluble tubulin
Microtubule surfaces and ends
Isotypes, i.e. 7 α-tubulin and 9 β-tubulin isotypes - some ubiquitious, some tissue-specific
Post-translational modifications, e.g. polyglutamylation, polyglycylation, phosphorylation etc. when a-tubulin and B-tubulin are being produced
What is the role of microtubules during interphase?
During interphase = microtubules turn over (i.e. exchange with soluble tubulin pool) slowly - heterodimers pop on and off without changing overall shape
At the onset of mitosis = entire networkdisassembles and is replaced by a new population of spindle microtubules which are 4-100 times more dynamic - rate of processes sped up, treadmilling occurs faster
For at least some cells this is a result of an increase in ‘catastrophe’ and a decrease in ‘rescue’ rather than any change in rates of shortening and growth
What is the role of microtubules during prometaphase?
Nuclear envelope broken down
Needs timely and correct attachment of chromosome kinetochores to the spindles
During prometaphase, microtubules ‘hunt’ - begin at a spindle pole , rapidly elongating (adding heterodimers in one direction and shooting out into cytoplasm to reach and attach to a chromosome) and shrinking (retracting if they fail to attach to a chromosome)
Essentially, probing the cytoplasm until they find and locate all chromosome kinetochores
They grow and shrink up to 10 µm until successful attachment
What is the role of microtubules during early metaphase?
Complex movement of chromosomes
Congression – movement to the equator to form the metaphase plate
What is the role of microtubules during anaphase?
Duplicated chromosomes separate
Chromosomes move towards the two spindle poles and thus to from two new daughter cells
What is the role of microtubules during telophase?
Duplicated chromosomes have reached new spindle poles
Cell is dividing
What is the rationale for targeting microtubules?
Microtubules have a key role in organising the chromosomes and cleaving to daughter cells at the right time during mitosis
Want to target this key step in cell division since cancer is characterised by rapid replication
General overview of microtubules therapy history
Microtubules = a favourite target for naturally occurring (presumably self-protective), toxins produced by a wide range of plants/animals - competition to survive in the world
Large scale screening of natural products - found significant number of compounds/leads for future
e.g. Vinca alkaloids first identified 50 years ago from periwinkle leaves - serendipitously shown to have bone marrow toxicity for diabetes
Overall success with the mitotic spindle drugs - thought that microtubules represent the best cancer target identified to date
What are types of antimitotic drugs?
The surfaces of the globular part of tubulin has six known MTA "binding sites" (allosteric) where agents can bind
Microtubule targetings agents (MTAs) alter the dynamics and ultimately lead to mitotic arrest and cell death
Two types overall - microtubule stabilising agents (MSAs) or microtubule destabilising agents (MDAs)
Many compounds (or at least lead compounds) from plants, fungi and invertabrates
Four binding sites on β-tubulin (taxane, laulimalide/peloruside, vinca and maytensine) and two on α-tubulin (colchicine and pironetin)
What does a semi-synthetic route mean?
Uses chemical compounds isolated from natural sources as the starting material and modifies it with extra synthesis to produce novel compounds
These isolated natural molecules are very close in structure to the final desired compound - a precursor
Isolated molecules can be obtained in larger yield than making the final desired compound from scratch - easier to just convert the isolated molecule
What is the mode of action of taxane ligands?
Taxanes bind poorly to soluble pool of tubulin but with high affinity to the taxane pocket on the B subunit near the ML surface on ‘inside’ of the tubulin (facing lumen)
Access through small gaps, or fluctuations in microtubule lattice
Conformational change acts to strengthenlateral contacts/binding affinity between adjacent protofilaments - leads to microtubulestabilisation
One site per heterodimer so in principle 1:1 stoichiometry - but just 1 paclitaxel per several hundredreduces rate or extent of shortening by 50%
What are some unknowns about taxane ligands' mode of action?
The exact mode of binding is compound specific - but all taxanes act in the same way
Its possible paclitaxel stabilises microtubules via. an allosteric mechanism (preventing dimer compaction)
What are taxane ligands?
Paclitaxel – tetracyclic diterpenoid
Isolated from Taxus brevifolia in 1960s
Approved in 1992 by FDA for ovarian cancer
Currently produced by semi-synthetic route from 10-deacetylbaccatins III from European yew Taxus baccata
Used in diverse cancer therapies - around 30+ years
Side effects – myelosuppression (reversible) as these cells also rapidly divide, peripheral neuropathy
What are laulimalide/peluroside ligands and their mode of action?
Laulimalide and peloruside A derive from sea sponges
X-ray and cryo-EM reveal a new, non-taxane site
Laulimalide/peluroside site is opposite side of ML surface (with respect to taxane), i.e. ‘outside’ MT wall
Microtubule stabilised by strengtheninglateral contacts between protofilaments
Evidence that the microtubule stabilising agents can interact with both its host tubulin and the adjacent tubulin
Biological investigation ongoing
What are vinca alkaloids?
Natural vinca alkaloids vincristine and vinblastine isolated from Periwinkle in the 50s
As 1st generation, achieved significant clinical success
Notable against childhood leukemia
Led to diverse, semi-synthetic analouges including vinorelbine
Similar to taxanes, significant side effect profile, i.e. myelosuppression (reversible) and peripheral neuropathy
What is the mode of action of vinca alkaloids?
Vinca site is located at the (+)-end surface of β-tubulin
Drug binding alters the surface of the (+)-end, forming a ‘wedge'
This interferes with incorporation of new heterodimers
The (+)-ends remain curved, and the smooth microtubule wall cannot form
In addition, vinca site ligands can cause tubulin oligomers, decreasing the free tubulin pool
At high concentrations (e.g. 10-100 nM in HeLa cells) microtubules depolymerise - but really only need one or two ligands at the end of microtubule to reduce dynamics by 50%
What is key factor should be targeted to stop biological activity of microtubules?
Suppression of dynamics
What is the maytansine site?
Maytansine and derivatives first isolated from Maytenus ovatus
Compounds currently under clinical evaluation
Maytansine site is close to the vinca site, but formed from other structures
In growing microtubules, the maytansine binding pocket of the (+)-end accommodates the (-)-end of the next α-tubulin unit
Incorporation of a ligand blocks this, impeding elongation
What is eribulin?
Eribulin is a fully synthetic analogue of a marine natural product (halichondrin B)
Both compounds show a unique mechanism of action
Mainly binds with high affinity to the (+)-end of existing microtubules - prevents future heterodimer binding
Used in metastatic breast cancer and for unresectable liposarcoma
Also shows non-mitotic effects – e.g. vascular remodelling which reduces tumour hypoxia and also a decreased metastasis and invasion
Being investigated in a range of solid tumours – breast, NSCLC, prostate, brain, cervical, etc.
What is the colchicine site?
Colchicine isolated from autumn crocus
Has been used clinically for treating gout
Severe toxicity at doses required for anti-tumour effects
Lower toxicity compounds, such as combretastatin, are currently in clinical trials
What is the mode of action of the colchicine binding site?
Binding site is located between the α- and β-tubulin units
Slow binding, practically irreversible
Binding to the heterodimer stabilises it in the curved conformation
During polymerisation, the ends transition from curved at the tip, to straight in the body
Presence of a colchicine type ligand prevents this, inhibiting polymerisation
Likely that it doesn’t bind to the microtubule tip, rather it binds to the soluble pool first and is then incorporated
Presence of tubulin/colchicine units slows but doesn’t prevent polymerisation
Why do these drugs work for only selected cancers?
Paclitaxel is very effective for ovarian, mammary and lung tumours - but essentially ineffectiveagainstsolid tumours such as colon and kidney carcinomas
Vinca alkaloids are effective for many haematological cancers - but usually ineffective against solid tumours
Possible modes of resistance
Overexpression of membrane transport proteins (ABC-transporters)
Microtubule associated proteins (MAPs)
Post translational modification
Up and/or down regulation of different tubulin isotypes