Very rarely, a single mutation will have a big effect on phenotype. For example, it might result in the production of a protein that is so different that it can no longer carry out its function. This is what happens in cystic fibrosis. A mutation causes a protein that controls the movement of salt and water into and out of cells to stop working properly. This leads to the production of thick, sticky mucus in the lungs and digestive system. which can make it difficult to breathe and digest food.