A taxonomic category that ranks above species and below family
Overt Pathogens
Organisms that really cause infection in the GI tract
Opportunistic Pathogens
Enteric organisms that are considered part of the normal flora in the GI tract, but can cause infection outside the GI tract
Opportunistic pathogens are the common causes of pneumonia, meningitis, urinary tract infection, sepsis/septicemia, and wound infections
Overt Pathogens
Shigella
Salmonella
Yersinia
Lactose Fermenters (Opportunistic Pathogens)
Escherichia
Enterobacter
Hafnia
Citrobacter
Erwinia
Proteus
Klebsiella
Serratia
Edwardsiella
Non-Lactose Fermenters (Overt Pathogens)
Shigella
Salmonella
Yersinia
Isolation and identification of enteric organisms
1. Isolate the organism using correct culture media
2. Demonstration of characteristic colonies on culture media
3. Demonstrate the biochemical reactions from the characteristic colonies
Differential, Mildly/Slightly Selective Media
Promotes the growth of gram (-) organisms, but inhibits the growth of gram (+) organisms. Cannot isolate pure organisms.
Differential, Moderately Selective Media
Isolates true pathogens/overt pathogens. Inhibits gram (+) organisms and other organisms other than true enteric pathogens. Only allows growth of Shigella, Yersinia, and Salmonella.
Highly Selective Media
Allows the growth of specific enteric organisms. Only allows the growth of one organism; does not need to differentiate organisms anymore.
Differential, Mildly Selective Media
Eosin-Methylene Blue Agar (EMB Agar)
MacConkey Agar
Differential, Moderately Selective Media
Salmonella Shigella Agar
Hektoen-Enteric Agar (HE, HEA, or HEK)
Xylose Lysine Desoxycholate/Deoxycholate Agar
Highly Selective Media
Bismuth Sulfite Agar
Shigella
Produce colorless colonies on HEK, but because of its base color green, when colonies are viewed, they appear green. Colonies are perceived as green because it is growing on top of a green colored medium.
Uninoculated
Turbid and green
Xylose Lysine Desoxycholate/Deoxycholate Agar
Suitable for Shigella
Sugars in Xylose Lysine Desoxycholate/Deoxycholate Agar
Lactose, sucrose, and xylose
pH indicator in Xylose Lysine Desoxycholate/Deoxycholate Agar
Phenol red
H2S indicator in Xylose Lysine Desoxycholate/Deoxycholate Agar
Sodium thiosulfate and ferric ammonium citrate (responsible for differential property)
Inhibitor in Xylose Lysine Desoxycholate/Deoxycholate Agar
Sodium deoxycholate (selective property)
Lysine in Xylose Lysine Desoxycholate/Deoxycholate Agar
An amino acid responsible for detecting salmonella reaction
Shigella on Xylose Lysine Desoxycholate/Deoxycholate Agar
Red colonies without black centers
Bismuth Sulfite Agar
Highly selective medium for isolation of S. typhi
H2S indicator in Bismuth Sulfite Agar
Bismuth sulfite and ferrous sulfate
Inhibitor in Bismuth Sulfite Agar
Brilliant green
S. typhi on Bismuth Sulfite Agar
Jet-black colonies with metallic sheen
Investigation of an unknown isolate or investigation of an unknown organism in microbiology laboratory or bacteriology laboratory entails knowing the causative agent of the infection of the patient.
Three basic steps
1. Microscopic evaluation
2. Identification of the correct culture medium or culture media
3. Biochemical reactions
Microscopic examination
To identify what culture medium or cultural media to use in the isolation of the organism causing infection to that specimen
Use the appropriate culture medium or culture media
Four Quadrant Streak Plate Method (qualitative) is frequently used because it is the method of isolating pure colonies
If the four quadrants do not show any colonies or apparent growth, then proceed to the next quadrant which is the third quadrant
If the third quadrant does not show any growth, proceed to the second quadrant and never use the colonies in the first quadrant
The first quadrant is always understood to contain both the organism of interest and the contaminants
Sterile specimen
A type of specimen where it contains only the organism that's really causing the infection
Non-sterile specimen
A specimen that will harbor other normal flora in addition to the organism of interest
When heating the wire loop in between quadrants for a non-sterile specimen, you are increasing the chance of killing the contaminants and also increasing the chance of isolating the organism of interest
Inoculate the proper or appropriate cultured medium or culture media
So that isolation of the organism of interest can be obtained at the end of the investigation
Incubate the cultural media
At 37 degrees Celsius for 24 hours
The third step in the investigation of unknown organism will only come into play once colonies are already seen in the culture media