Genetic analysis has changed how we classify organisms. DNA changes over time, so looking at these changes, scientists can work out how closely related organisms are.
The three domain systems have now been proposed to incorporate these ideas.
Archaea - cells with no nucleus, genes contain unused sections of DNA
Bacteria - cells with no nucleus, genes contain no unused sections of DNA
Eukarya - cells with a nucleus, contain unused sections of DNA, e.g. animals, plants, fungi, protists with cilia, protist with flagella