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BIO 1 1ST SEM
Chemical Biology
Chp 2 Molecular Orbital Theory, Orbital Hybrid, & IMFA
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Molecular Orbital Theory
,
Intermolecular Forces
, and
Acid-Base Organic Reactions
are topics discussed in
BIOL 103 Session 2.
Atomic Orbitals
(
AOs
) are the physical reality of
Y squared
, which gives the
probability
of finding an
electron
in a particular location in
space.
Group can overwhelm the ability of the
polar
group to
solubilize
a molecule in water.
One
hydrophilic
group such as
hydroxyl
can make a compound with
3 carbons completely soluble
in water.
Plots of
Y
squared in three dimensions generate the shape of s, p, d, and f
orbitals.
Only
s
and
p
orbitals are very important in
organic
chemistry.
An
orbital
is a region in space where the probability of finding an electron is
large.
The typical representation of orbitals are those volumes which contain the electron
90-95
% of the time.
1 s and 2 s orbitals are
spheres
centered around the
nucleus.
Each orbital can accommodate
2
electrons.
The
2
s orbital is
higher
in energy and contains a
nodal surface
(
Y
=
0
) in its center.
Each 2 p orbital has
two
nearly
touching
spheres (or
lobes
).
There are
three 2
p orbitals which are
perpendicular
(
orthogonal
) to each other.
The 2 p orbitals are
higher
in energy than the
1
s or
2
s.
Aufbau Principle
: The
lowest energy orbitals
are filled
first.
The axis that passes through the center of the sp orbitals is referred to as the
sp axis.
Ethyne depictions show that the
electron density
around the carbon-carbon bond has
circular
symmetry.
Even if rotation around the carbon-carbon bond occurred in
ethyne
, a different
compound
would not result.
The carbon-carbon bond length is
shorter
as
more bonds
hold the carbons
together.
With more
electron density
between the carbons, there is more "glue" to hold the
nuclei
of the carbons together.
The carbon-hydrogen bond lengths also get
shorter
with
more
s character of the bond.
2s
orbitals are held more closely to the
nucleus
than
2p
orbitals.
A hybridized orbital with
more
percent s character is held more closely to the
nucleus
than an orbital with
less
s character.
The sp orbital of ethyne has
50
% s character and its C-H bond is
shorter.
The sp3 orbital of ethane has only
25
% s character and its C-H bond is
longer.
The
strength
of intermolecular forces determines the
physical properties.
Pauli Exclusion Principle
: A maximum of
two spin paired electrons
may be placed in each orbital.
Hund’s Rule
:
One electron
is added to each
degenerate
(
equal energy orbital
) before a
second electron
is added.
Cr
:
3d
^
6
Cr
:
3d
^
5
Cr
: 3d^4
Cr
: 3d^3
Cr
: 3d^2
Cr
: 3d
Cr
: 2d^6
Cr
: 2d^5
Cr
: 2d^4
Cr
: 2d^3
Cr
: 2d
Melting point, boiling point and solubility are influenced by
stronger intermolecular forces.
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