Photosystems are light-capturing complexes located in the thylakoid membranes that contain different pigments, each of which absorb different wavelengths of light.
Plants obtain a good source of ATP for the light-independent stage by using light (photo) to create the high-energy electrons needed to power the electron transport chain to drive ATP synthetase (phosphorylation).
The distance moved by the solvent (the solvent front) and the Rf values can be calculated and compared to known data to identify the different pigments.
Electrons are passed along an electron transport chain powering proton pumps to pump protons from the stroma into the thylakoid space, decreasing the pH.
The increased concentration of protons causes them to flow down the gradient back out of the thylakoid space through ATP synthetase, driving the synthesis of ATP from ADP and Pi.
The light independent reaction, also known as the Calvin cycle, involves the conversion of carbon dioxide into sugars such as ribulose bisphosphate and triose phosphate.
Glycerate-3-phosphate is reduced by reduced NADP and using energy from ATP (both received from the light dependent cycle) to form 2x 3C carbohydrates called triose phosphate (TP).
1C from the triose phosphates will be used to synthesise a hexose sugar; the other 5C form ribulose phosphate which is regenerated to ribulose bisphosphate using ATP, and the cycle begins again.
Temperature is a factor limiting the reaction and increases in temperature above the optimum can cause denaturation of enzymes that similarly limits the rate.