pesticides are deliberately used because they are toxic and are intended to kill pests
because pesticides are not species-specific, sensitive non-target species may also be killed
species may also be affected if inter-species relationships are affected such as the death of food species, pollinators, or pollution that favours competitor species
nutrient pollution
the nutrients that were intended to stimulate crop growth, or are digestive wastes from livestock, can stimulate the growth of undesirable organisms
leached inorganic nutrients cause eutrophication, for example, nitrate fertiliser
organic nutrients such as manure can cause deoxygenation of rivers and lakes because of the aerobic respiration of bacteria
nitrate toxicity
nitrates can be leached from farmland into water bodies that are used as sources of potable water for human consumption
high nitrate levels can cause blue baby syndrome and nitrates may be a human carcinogen
climate change
several farming activities release greenhouse gases
oxides of nitrogen (nitrous oxide) - from livestock manure and nitrogen fertilisers
embodied energy
the manufacture of materials, especially nitrate fertilisers, and machinery, usually involves the use of fossil fuels and causes the release of GHGs, mainly carbon dioxide