There are many more genes in a genome than there are chromosomes:
When two are more genes loci are on the same chromosome, they are said to be linked.
The chromosome, not the gene, is the unit of transmission during sexual reproduction - therefore, genes are not free to undergo independent assortment and are usually inherited together as a unit.
When a set of genes on the same autosome are inherited together as one unit, this is called autosomal linkage.
In autosomal linkage, when gene loci are close together on the same chromosome, there is usually no crossing over in Prophase I of meiosis - the linked genes are inherited as one unit.
If the gene loci are far apart, there may be crossing over and independent assortment, producing recombinant gametes.
In sweet pea plants, the genes for flower colour and pollen grain shape are on the same chromosome - each gene has 2 alleles:
When true-breeding homozygous dominant plants are crossed with homozygous recessive plants, only two types of gamete are expected with no independent assortment.
When members of the heterozygous F2 generation interbreed, only one type of gamete is expected, producing a ratio of 1:2:1 of dominant : heterozygous : recessive:
The ratios are the same as the Mendelian monohybrid inheritance ratios with only 2 phenotypes in the F2 generation.
If the genes were not linked, we would expected 4 different distinct phenotypes in the ratio of 9:3:3:1.
If the gene loci are far apart, there may be some crossing over and independent assortment, producing some recombinant gametes but not all - crossing over is rare in linked genes.
If crossing over occurs in meiosis, then plants can have a different combination of phenotypes.
Four phenotypes can be produced, but do not show the expected 9:3:3:1 ratio that would be expected if the genes were not linked.
In autosomal linkage with crossing over, there are also some recombinant gametes:
The further apart the gene loci on the chromosome, the greater the chance of recombinant gametes forming.