Biology is an exciting time where we can use approaches like Darwin first did, that is studies of natural history, observation and experiment in the wild, but combine that with studies of modern day molecular genetics to understand the genetic basis of what Darwin referred to as that perfection of structure and coadaptation which most justly excites our admiration.
Evolutionary genetics involves tracking down the genes and developmental mechanisms involved in camouflaging and color differences between two species of wild mice.
Darwin knew a lot about evolutionary change, but he didn't know the mechanism of evolutionary change, or the genetic nuts and bolts about how organisms adapt to their environment.
Beneficial mutations can occur in the protein itself, affecting the structure and function of that protein, or in non-coding DNA, affecting the regulation, timing or place of expression of that protein.
Understanding why certain changes occur in regulatory regions and certain changes occur in structural regions is important for understanding the evolutionary process.
Changes in genes can produce changes in phenotype, and understanding how these changes occur can provide insights into the mechanistic aspects of evolutionary change.