The alpha helix or beta pleated sheet can also be arranged in various ways which give the protein its 3D shape.
The tertiary structure is vital because proteins mainly work on the basis of their shape.
The tertiary structure of a protein is determined by R groups. These can form different types of bonds with the R groups of nearby amino acids, and these hold the shape firmly in place.
Bonds that maintain the tertiary structure:
Disulphide bonds - protect against heat
Ionic bonds - If R groups are oppositely charged
Hydrogen bonds
Hydrophilic and Hydrophobic interactions - hydrophobic generally are inside the protein when in solution
If an R group has no charge it is hydrophobic and soluble amino acids are normally charged.